Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate abc transporter permease | YT1_RS26375 | Not Available | Negative | 5534236 - 5535318 | 38747.7 |
| abc transporter substrate-binding protein | YT1_RS26380 | Not Available | Negative | 5535333 - 5536610 | 45324.0 |
| abc transporter atp-binding protein | YT1_RS26385 | Not Available | Negative | 5536756 - 5537829 | 39321.6 |
| duf2786 domain-containing protein | YT1_RS26390 | Not Available | Positive | 5537919 - 5538728 | 29281.7 |
| tigr04338 family metallohydrolase | YT1_RS26395 | Not Available | Positive | 5538725 - 5539240 | 18932.3 |
| csbd family protein | YT1_RS26400 | Not Available | Negative | 5539245 - 5539466 | 8257.95 |
| hypothetical protein | YT1_RS26405 | Not Available | Positive | 5539760 - 5540464 | 25493.1 |
| srpbcc family protein | YT1_RS26410 | Not Available | Positive | 5540470 - 5541702 | 44920.7 |
| gas vesicle protein gvpj | YT1_RS26415 | Not Available | Positive | 5541699 - 5542121 | 14403.2 |
| gvpl/gvpf family gas vesicle protein | YT1_RS26420 | Not Available | Positive | 5542121 - 5542918 | 28931.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


