Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i methionyl aminopeptidase | YT1_RS03410 | Not Available | Positive | 508729 - 509496 | 26098.1 |
| fad-binding and (fe-s)-binding domain-containing protein | YT1_RS03415 | Not Available | Positive | 509568 - 512342 | 98317.8 |
| doxx family protein | YT1_RS03420 | Not Available | Positive | 512502 - 512921 | 15200.2 |
| galactan 5-o-arabinofuranosyltransferase | YT1_RS03425 | Not Available | Negative | 512976 - 514889 | 67842.4 |
| decaprenylphospho-beta-d-erythro-pentofuranosid- 2-ulose 2-reductase | YT1_RS03430 | Not Available | Negative | 514929 - 515726 | 28007.0 |
| fad-binding oxidoreductase | YT1_RS03435 | Not Available | Negative | 515726 - 517150 | 52089.1 |
| gtra family protein | YT1_RS03440 | Not Available | Positive | 517296 - 517781 | 18021.9 |
| gtra family protein | YT1_RS03445 | Not Available | Negative | 517848 - 518333 | 17425.3 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | YT1_RS03450 | Not Available | Negative | 518330 - 518917 | 21080.8 |
| glucose-1-phosphate thymidylyltransferase rfba | YT1_RS03455 | Not Available | Negative | 518920 - 519792 | 31786.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


