Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xanthine dehydrogenase family protein molybdopterin-binding subunit | YT1_RS25885 | Not Available | Positive | 5425134 - 5427521 | 85649.6 |
| fad binding domain-containing protein | YT1_RS25890 | Not Available | Positive | 5427518 - 5428375 | 29981.7 |
| srpbcc family protein | YT1_RS25895 | Not Available | Positive | 5428398 - 5429075 | 23101.0 |
| llm class f420-dependent oxidoreductase | YT1_RS25900 | Not Available | Positive | 5429310 - 5430212 | 32294.2 |
| helix-turn-helix transcriptional regulator | YT1_RS25905 | Not Available | Negative | 5430285 - 5431028 | 25981.7 |
| hypothetical protein | YT1_RS25910 | Not Available | Positive | 5431123 - 5431572 | 15542.2 |
| hypothetical protein | YT1_RS25915 | Not Available | Positive | 5431643 - 5432119 | 16406.5 |
| glycoside hydrolase family 15 protein | YT1_RS25920 | Not Available | Positive | 5432121 - 5433947 | 66747.4 |
| hypothetical protein | YT1_RS25925 | Not Available | Positive | 5434000 - 5434641 | 23599.3 |
| fad-binding oxidoreductase | YT1_RS25930 | Not Available | Positive | 5434638 - 5436041 | 50312.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


