Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | YT1_RS25835 | Not Available | Positive | 5414581 - 5415204 | 21290.7 |
| rok family transcriptional regulator | YT1_RS25840 | Not Available | Positive | 5415385 - 5416551 | 39920.0 |
| sugar porter family mfs transporter | YT1_RS25845 | Not Available | Positive | 5416765 - 5418207 | 50196.1 |
| rok family glucokinase | YT1_RS25850 | Not Available | Positive | 5418244 - 5419227 | 33400.7 |
| aaa family atpase | YT1_RS25855 | Not Available | Positive | 5419311 - 5420201 | 32625.2 |
| vwa domain-containing protein | YT1_RS25860 | Not Available | Positive | 5420210 - 5421325 | 40171.0 |
| xdhc family protein | YT1_RS25865 | Not Available | Positive | 5421318 - 5422457 | 39949.3 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | YT1_RS25870 | Not Available | Negative | 5422469 - 5423935 | 53083.5 |
| duf6098 family protein | YT1_RS25875 | Not Available | Negative | 5423974 - 5424435 | 17186.3 |
| (2fe-2s)-binding protein | YT1_RS25880 | Not Available | Positive | 5424634 - 5425137 | 17773.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


