Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polyphosphate polymerase domain-containing protein | YT1_RS25785 | Not Available | Positive | 5403057 - 5403965 | 34268.0 |
| duf4956 domain-containing protein | YT1_RS25790 | Not Available | Positive | 5404008 - 5404685 | 25030.8 |
| coth kinase family protein | YT1_RS25795 | Not Available | Positive | 5404685 - 5406226 | 55081.0 |
| aaa family atpase | YT1_RS25800 | Not Available | Positive | 5406270 - 5407058 | 28277.7 |
| sigma-70 family rna polymerase sigma factor | YT1_RS25805 | Not Available | Positive | 5407286 - 5407702 | 15492.5 |
| gap family protein | YT1_RS25810 | Not Available | Positive | 5407985 - 5408650 | 22804.8 |
| atp-binding protein | YT1_RS25815 | Not Available | Positive | 5408749 - 5409924 | 42577.7 |
| rok family protein | YT1_RS25820 | Not Available | Negative | 5409930 - 5411114 | 40523.9 |
| glucose-6-phosphate dehydrogenase | YT1_RS25825 | Not Available | Positive | 5411283 - 5412746 | 54267.7 |
| phosphogluconate dehydratase | YT1_RS25830 | Not Available | Positive | 5412743 - 5414569 | 63196.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


