Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cutinase family protein | YT1_RS03360 | Not Available | Positive | 489071 - 490033 | 34009.5 |
| llm class f420-dependent oxidoreductase | YT1_RS03365 | Not Available | Positive | 490185 - 491180 | 35620.0 |
| long-chain-fatty-acid--amp ligase fadd32 | YT1_RS03370 | Not Available | Positive | 491350 - 493239 | 67945.0 |
| polyketide synthase pks13 | YT1_RS03375 | Not Available | Positive | 493290 - 498284 | 177522.0 |
| acyl-coa carboxylase subunit beta | YT1_RS03380 | Not Available | Positive | 498292 - 499836 | 55297.3 |
| hypothetical protein | YT1_RS03385 | Not Available | Negative | 499911 - 500861 | 34788.7 |
| hypothetical protein | YT1_RS03390 | Not Available | Negative | 501044 - 501478 | 14463.2 |
| arabinosyltransferase domain-containing protein | YT1_RS03395 | Not Available | Negative | 501688 - 504999 | 118354.0 |
| arabinosyltransferase domain-containing protein | YT1_RS03400 | Not Available | Negative | 505061 - 508312 | 114354.0 |
| helix-turn-helix domain-containing protein | YT1_RS03405 | Not Available | Negative | 508421 - 508690 | 9326.14 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


