Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aldo/keto reductase | YT1_RS25690 | Not Available | Negative | 5387300 - 5388136 | 29706.4 |
| fad-dependent oxidoreductase | YT1_RS25695 | Not Available | Negative | 5388133 - 5390085 | 69083.7 |
| shikimate dehydrogenase | YT1_RS25700 | Not Available | Negative | 5390082 - 5390981 | 31133.4 |
| mfs transporter | YT1_RS25705 | Not Available | Negative | 5391048 - 5392412 | 48681.3 |
| lysr family transcriptional regulator | YT1_RS25710 | Not Available | Negative | 5392558 - 5393451 | 31995.8 |
| sdr family nad(p)-dependent oxidoreductase | YT1_RS25715 | Not Available | Positive | 5393584 - 5394276 | 23519.0 |
| 4-hydroxybenzoate 3-monooxygenase | YT1_RS25720 | Not Available | Negative | 5394396 - 5395580 | 44141.0 |
| iclr family transcriptional regulator | YT1_RS25725 | Not Available | Negative | 5395683 - 5396423 | 26370.2 |
| aim24 family protein | YT1_RS25730 | Not Available | Positive | 5396505 - 5397125 | 21633.8 |
| aim24 family protein | YT1_RS25735 | Not Available | Positive | 5397134 - 5397835 | 23640.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


