Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| class i adenylate-forming enzyme family protein | YT1_RS25640 | Not Available | Negative | 5374473 - 5376146 | 58759.5 |
| sdr family nad(p)-dependent oxidoreductase | YT1_RS25645 | Not Available | Negative | 5376157 - 5376921 | 26263.7 |
| thiolase family protein | YT1_RS25650 | Not Available | Negative | 5376951 - 5378081 | 38663.1 |
| mfs transporter | YT1_RS25655 | Not Available | Negative | 5378205 - 5379539 | 46002.4 |
| coa transferase | YT1_RS25660 | Not Available | Positive | 5379853 - 5381121 | 44615.5 |
| acyl-coa dehydrogenase family protein | YT1_RS25665 | Not Available | Positive | 5381118 - 5382311 | 43616.3 |
| acyl-coa dehydrogenase family protein | YT1_RS25670 | Not Available | Positive | 5382396 - 5383553 | 41834.7 |
| sugar phosphate isomerase/epimerase family protein | YT1_RS25675 | Not Available | Negative | 5383652 - 5384482 | 29281.1 |
| fad-dependent oxidoreductase | YT1_RS25680 | Not Available | Negative | 5384479 - 5386209 | 61306.0 |
| gfo/idh/moca family protein | YT1_RS25685 | Not Available | Negative | 5386206 - 5387300 | 38365.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


