Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii 3-dehydroquinate dehydratase | YT1_RS25540 | Not Available | Positive | 5351971 - 5352429 | 16153.2 |
| sugar phosphate isomerase/epimerase and 4-hydroxyphenylpyruvate domain-containing protein | YT1_RS25545 | Not Available | Positive | 5352572 - 5354401 | 66044.1 |
| nad-dependent epimerase/dehydratase family protein | YT1_RS25550 | Not Available | Negative | 5354408 - 5355412 | 35439.1 |
| mbl fold metallo-hydrolase | YT1_RS25555 | Not Available | Positive | 5355538 - 5356539 | 35742.4 |
| tellurium resistance protein tera | YT1_RS25560 | Not Available | Negative | 5356585 - 5357265 | 23745.3 |
| duf475 domain-containing protein | YT1_RS25565 | Not Available | Negative | 5357347 - 5358435 | 38984.3 |
| terd family protein | YT1_RS25570 | Not Available | Negative | 5358560 - 5359135 | 20401.5 |
| hypothetical protein | YT1_RS25575 | Not Available | Positive | 5359369 - 5360490 | 40681.6 |
| hpch/hpai aldolase/citrate lyase family protein | YT1_RS25580 | Not Available | Positive | 5360487 - 5361677 | 43114.5 |
| phosphoribosyltransferase family protein | YT1_RS25585 | Not Available | Positive | 5361674 - 5362945 | 45043.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


