Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| marr family winged helix-turn-helix transcriptional regulator | YT1_RS25350 | Not Available | Positive | 5317526 - 5318038 | 19014.6 |
| hypothetical protein | YT1_RS25355 | Not Available | Negative | 5318132 - 5318608 | 17026.2 |
| duf72 domain-containing protein | YT1_RS25360 | Not Available | Negative | 5318684 - 5319499 | 30377.9 |
| hded family acid-resistance protein | YT1_RS25365 | Not Available | Positive | 5319614 - 5320201 | 21092.9 |
| tigr03618 family f420-dependent ppox class oxidoreductase | YT1_RS25370 | Not Available | Negative | 5320232 - 5320642 | 15575.6 |
| gyd domain-containing protein | YT1_RS25375 | Not Available | Positive | 5320798 - 5321118 | 11368.4 |
| lysr family transcriptional regulator | YT1_RS25380 | Not Available | Negative | 5321199 - 5322062 | 30886.2 |
| mfs transporter | YT1_RS25385 | Not Available | Positive | 5322139 - 5323383 | 43351.3 |
| tetr family transcriptional regulator | YT1_RS25390 | Not Available | Negative | 5323444 - 5324052 | 22937.7 |
| sdr family nad(p)-dependent oxidoreductase | YT1_RS25395 | Not Available | Positive | 5324585 - 5325508 | 31786.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


