Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | YT1_RS24905 | Not Available | Positive | 5222867 - 5224213 | 45990.0 |
| helix-turn-helix transcriptional regulator | YT1_RS24910 | Not Available | Positive | 5224225 - 5226909 | 96972.2 |
| benzoate/h(+) symporter bene family transporter | YT1_RS24915 | Not Available | Positive | 5226918 - 5228174 | 42910.3 |
| hypothetical protein | YT1_RS27395 | Not Available | Negative | 5228208 - 5228378 | 5908.02 |
| nad(p)h-dependent glycerol-3-phosphate dehydrogenase | YT1_RS24920 | Not Available | Positive | 5228575 - 5229582 | 35207.4 |
| flavin-containing monooxygenase | YT1_RS24925 | Not Available | Positive | 5229673 - 5231100 | 52260.1 |
| nitroreductase | YT1_RS24930 | Not Available | Positive | 5231138 - 5231818 | 24628.1 |
| sigma-70 family rna polymerase sigma factor | YT1_RS24935 | Not Available | Positive | 5231900 - 5232484 | 21491.0 |
| aaa family atpase | YT1_RS24940 | Not Available | Negative | 5232438 - 5233625 | 42369.4 |
| zinc metallochaperone aztd | YT1_RS24945 | Not Available | Positive | 5233745 - 5234983 | 42884.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


