Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flavin reductase family protein | YT1_RS24855 | Not Available | Positive | 5212004 - 5212567 | 20090.6 |
| 4-hydroxyphenylacetate 3-hydroxylase family protein | YT1_RS24860 | Not Available | Positive | 5212615 - 5214234 | 60565.8 |
| hypothetical protein | YT1_RS24865 | Not Available | Positive | 5214305 - 5214796 | 17972.0 |
| arac family transcriptional regulator | YT1_RS24870 | Not Available | Negative | 5214866 - 5215831 | 33998.3 |
| cytochrome p450 | YT1_RS24875 | Not Available | Positive | 5215970 - 5217181 | 44477.2 |
| 2fe-2s iron-sulfur cluster-binding protein | YT1_RS24880 | Not Available | Positive | 5217208 - 5218206 | 35922.5 |
| benzoate 1,2-dioxygenase large subunit | YT1_RS24885 | Not Available | Positive | 5218414 - 5219793 | 51853.4 |
| benzoate 1,2-dioxygenase small subunit | YT1_RS24890 | Not Available | Positive | 5219807 - 5220310 | 19884.3 |
| benzoate 1,2-dioxygenase electron transfer component benc | YT1_RS24895 | Not Available | Positive | 5220344 - 5221951 | 58382.3 |
| 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase | YT1_RS24900 | Not Available | Positive | 5221948 - 5222757 | 28405.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


