Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | YT1_RS24805 | Not Available | Positive | 5202286 - 5203188 | 32805.4 |
| alpha/beta hydrolase | YT1_RS24810 | Not Available | Positive | 5203286 - 5204122 | 29890.8 |
| 4,5-dopa dioxygenase extradiol | YT1_RS24815 | Not Available | Positive | 5204148 - 5204990 | 30119.3 |
| alpha/beta hydrolase | YT1_RS24820 | Not Available | Negative | 5205120 - 5206097 | 35940.3 |
| alkaline phosphatase family protein | YT1_RS24825 | Not Available | Negative | 5206163 - 5207296 | 40332.0 |
| muconolactone delta-isomerase | YT1_RS24830 | Not Available | Negative | 5207321 - 5207608 | 11271.5 |
| muconate/chloromuconate family cycloisomerase | YT1_RS24835 | Not Available | Negative | 5207679 - 5208806 | 39724.9 |
| catechol 1,2-dioxygenase | YT1_RS24840 | Not Available | Negative | 5208934 - 5209785 | 31692.9 |
| iclr family transcriptional regulator c-terminal domain-containing protein | YT1_RS24845 | Not Available | Positive | 5209983 - 5210753 | 27389.8 |
| arac family transcriptional regulator | YT1_RS24850 | Not Available | Negative | 5210760 - 5211689 | 33812.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


