Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ai-2e family transporter | YT1_RS24655 | Not Available | Positive | 5176206 - 5177345 | 40759.2 |
| peroxidase-related enzyme | YT1_RS24660 | Not Available | Negative | 5177350 - 5177901 | 20559.5 |
| marr family winged helix-turn-helix transcriptional regulator | YT1_RS24665 | Not Available | Negative | 5178003 - 5178470 | 17226.5 |
| carboxymuconolactone decarboxylase family protein | YT1_RS24670 | Not Available | Positive | 5178534 - 5179145 | 21518.9 |
| coa transferase subunit b | YT1_RS24675 | Not Available | Negative | 5179195 - 5179848 | 22928.0 |
| coa transferase subunit a | YT1_RS24680 | Not Available | Negative | 5179845 - 5180591 | 26090.0 |
| protocatechuate 3,4-dioxygenase subunit beta | YT1_RS24685 | Not Available | Positive | 5180761 - 5181480 | 27146.7 |
| protocatechuate 3,4-dioxygenase subunit alpha | YT1_RS24690 | Not Available | Positive | 5181473 - 5182069 | 21452.8 |
| lyase family protein | YT1_RS24695 | Not Available | Positive | 5182083 - 5183423 | 45827.4 |
| 3-oxoadipate enol-lactonase | YT1_RS24700 | Not Available | Positive | 5183420 - 5184586 | 41130.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


