Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sdr family nad(p)-dependent oxidoreductase | YT1_RS24555 | Not Available | Negative | 5158750 - 5159511 | 26423.5 |
| acetyl-coa c-acetyltransferase | YT1_RS24560 | Not Available | Negative | 5159660 - 5160877 | 42135.2 |
| acyl-coa dehydrogenase family protein | YT1_RS24565 | Not Available | Negative | 5160914 - 5162059 | 42398.7 |
| tetr/acrr family transcriptional regulator | YT1_RS24570 | Not Available | Positive | 5162169 - 5162771 | 22186.3 |
| duf3558 domain-containing protein | YT1_RS24575 | Not Available | Positive | 5162941 - 5163513 | 20176.7 |
| hypothetical protein | YT1_RS24580 | Not Available | Positive | 5163528 - 5163854 | 12072.2 |
| wxg100 family type vii secretion target | YT1_RS24585 | Not Available | Positive | 5164138 - 5165433 | 42854.9 |
| esx secretion-associated protein espg | YT1_RS24590 | Not Available | Positive | 5165430 - 5166188 | 27636.6 |
| duf309 domain-containing protein | YT1_RS24595 | Not Available | Positive | 5166181 - 5166654 | 17638.7 |
| lon peptidase substrate-binding domain-containing protein | YT1_RS24600 | Not Available | Positive | 5166654 - 5167274 | 22727.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


