Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arsr/smtb family transcription factor | YT1_RS24505 | Not Available | Positive | 5149037 - 5149447 | 15051.0 |
| cation diffusion facilitator family transporter | YT1_RS24510 | Not Available | Positive | 5149444 - 5150508 | 37345.9 |
| ndma-dependent alcohol dehydrogenase | YT1_RS24515 | Not Available | Negative | 5150759 - 5151886 | 39185.4 |
| srpbcc family protein | YT1_RS24520 | Not Available | Positive | 5152029 - 5152472 | 16219.4 |
| srpbcc family protein | YT1_RS24525 | Not Available | Positive | 5152612 - 5153055 | 16293.4 |
| 4-hydroxyphenylpyruvate dioxygenase | YT1_RS24530 | Not Available | Negative | 5153103 - 5154308 | 45014.9 |
| lrp/asnc family transcriptional regulator | YT1_RS24535 | Not Available | Positive | 5154493 - 5155002 | 18411.5 |
| glu/leu/phe/val dehydrogenase dimerization domain-containing protein | YT1_RS24540 | Not Available | Positive | 5155212 - 5156477 | 45616.7 |
| amino acid permease | YT1_RS24545 | Not Available | Positive | 5156470 - 5157879 | 48575.5 |
| 3-oxoacyl-acp reductase fabg | YT1_RS24550 | Not Available | Negative | 5157961 - 5158722 | 25982.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


