Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonuclease h family protein | YT1_RS24455 | Not Available | Positive | 5139910 - 5140755 | 29769.5 |
| hypothetical protein | YT1_RS24460 | Not Available | Positive | 5140890 - 5141198 | 10627.7 |
| hypothetical protein | YT1_RS24465 | Not Available | Negative | 5141247 - 5141645 | 12427.9 |
| ribulose 1,5-bisphosphate carboxylase large subunit | YT1_RS24470 | Not Available | Positive | 5141956 - 5142588 | 22067.3 |
| 2,3-butanediol dehydrogenase | YT1_RS24475 | Not Available | Negative | 5142592 - 5143647 | 37087.2 |
| gaf domain-containing protein | YT1_RS24480 | Not Available | Positive | 5143868 - 5145133 | 44696.6 |
| sdr family nad(p)-dependent oxidoreductase | YT1_RS24485 | Not Available | Negative | 5145138 - 5145890 | 25854.9 |
| phosphotransferase family protein | YT1_RS24490 | Not Available | Negative | 5145887 - 5146918 | 36438.1 |
| acyl-coa dehydrogenase family protein | YT1_RS24495 | Not Available | Negative | 5146915 - 5148132 | 42958.2 |
| tetr/acrr family transcriptional regulator | YT1_RS24500 | Not Available | Negative | 5148297 - 5148917 | 22892.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


