Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| indolepyruvate ferredoxin oxidoreductase family protein | YT1_RS24405 | Not Available | Negative | 5124148 - 5127681 | 125958.0 |
| pucr family transcriptional regulator | YT1_RS24410 | Not Available | Positive | 5127709 - 5128908 | 43629.9 |
| mfs transporter | YT1_RS24415 | Not Available | Negative | 5128929 - 5130296 | 49402.9 |
| alpha/beta fold hydrolase | YT1_RS24420 | Not Available | Negative | 5130454 - 5131404 | 34487.8 |
| alpha/beta fold hydrolase | YT1_RS24425 | Not Available | Negative | 5131763 - 5133382 | 59875.4 |
| helix-turn-helix transcriptional regulator | YT1_RS27885 | Not Available | Negative | 5133580 - 5133839 | 9669.52 |
| pasta domain-containing protein | YT1_RS24435 | Not Available | Negative | 5133947 - 5134750 | 27401.9 |
| hypothetical protein | YT1_RS27390 | Not Available | Negative | 5134863 - 5136041 | 42869.4 |
| type i restriction-modification system subunit m | YT1_RS24445 | Not Available | Negative | 5136038 - 5137651 | 59512.4 |
| hypothetical protein | YT1_RS24450 | Not Available | Negative | 5137654 - 5139726 | 74259.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


