Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2510 domain-containing protein | YT1_RS24365 | Not Available | Positive | 5116096 - 5116695 | 21504.9 |
| duf86 domain-containing protein | YT1_RS24370 | Not Available | Negative | 5116847 - 5117107 | 9804.86 |
| xre family transcriptional regulator | YT1_RS24375 | Not Available | Negative | 5117217 - 5117675 | 16428.7 |
| acyl-coa thioesterase domain-containing protein | YT1_RS24380 | Not Available | Negative | 5117831 - 5118637 | 29165.1 |
| hypothetical protein | YT1_RS27760 | Not Available | Negative | 5118676 - 5119152 | 16229.7 |
| hypothetical protein | YT1_RS24385 | Not Available | Negative | 5119104 - 5119928 | 28666.2 |
| alpha-hydroxy acid oxidase | YT1_RS27765 | Not Available | Negative | 5120011 - 5120877 | 30616.8 |
| alpha-hydroxy-acid oxidizing protein | YT1_RS27770 | Not Available | Negative | 5120796 - 5121260 | 16603.8 |
| dihydroxy-acid dehydratase | YT1_RS24395 | Not Available | Negative | 5121404 - 5123113 | 60180.0 |
| 2-hydroxyacid dehydrogenase | YT1_RS24400 | Not Available | Negative | 5123168 - 5124151 | 34433.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


