Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| marr family winged helix-turn-helix transcriptional regulator | YT1_RS24275 | Not Available | Negative | 5098456 - 5098989 | 20175.1 |
| duf4247 domain-containing protein | YT1_RS24280 | Not Available | Negative | 5099148 - 5099576 | 15408.2 |
| yhge/pip domain-containing protein | YT1_RS24285 | Not Available | Positive | 5099757 - 5101091 | 46781.1 |
| tetr/acrr family transcriptional regulator | YT1_RS24290 | Not Available | Positive | 5101358 - 5102023 | 24403.7 |
| 3-hydroxyacyl-coa dehydrogenase | YT1_RS24295 | Not Available | Positive | 5102020 - 5102886 | 30681.2 |
| bifunctional 3'-5' exonuclease/dna polymerase | YT1_RS24300 | Not Available | Positive | 5103074 - 5104690 | 57670.6 |
| dna-3-methyladenine glycosylase family protein | YT1_RS24305 | Not Available | Negative | 5104669 - 5105526 | 30518.5 |
| methylated-dna--[protein]-cysteine s-methyltransferase | YT1_RS24310 | Not Available | Negative | 5105523 - 5106104 | 20379.7 |
| rna polymerase sigma factor | YT1_RS24315 | Not Available | Negative | 5106101 - 5106592 | 17566.9 |
| methylated-dna--[protein]-cysteine s-methyltransferase | YT1_RS24320 | Not Available | Negative | 5106579 - 5107076 | 17819.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


