Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| marr family winged helix-turn-helix transcriptional regulator | YT1_RS24225 | Not Available | Positive | 5088115 - 5088627 | 18834.2 |
| acyl-coa dehydrogenase family protein | YT1_RS24230 | Not Available | Negative | 5088608 - 5089759 | 42017.1 |
| acyl-coa synthetase | YT1_RS24235 | Not Available | Negative | 5089837 - 5091354 | 55062.7 |
| enoyl-coa hydratase | YT1_RS24240 | Not Available | Negative | 5091410 - 5092210 | 28222.1 |
| alpha/beta fold hydrolase | YT1_RS24245 | Not Available | Negative | 5092221 - 5093108 | 30430.2 |
| llm class f420-dependent oxidoreductase | YT1_RS24250 | Not Available | Negative | 5093218 - 5094192 | 34905.8 |
| mosc domain-containing protein | YT1_RS24255 | Not Available | Positive | 5094277 - 5095002 | 26268.2 |
| fumarylacetoacetase | YT1_RS24260 | Not Available | Negative | 5095083 - 5096270 | 42296.7 |
| hypothetical protein | YT1_RS24265 | Not Available | Negative | 5096267 - 5097151 | 30437.4 |
| homogentisate 1,2-dioxygenase | YT1_RS24270 | Not Available | Negative | 5097148 - 5098344 | 44522.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


