Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transposase | YT1_RS23880 | Not Available | Positive | 5015336 - 5017021 | 58992.7 |
| rtcb family protein | YT1_RS23885 | Not Available | Negative | 5017150 - 5018571 | 50577.6 |
| archease | YT1_RS23890 | Not Available | Positive | 5018658 - 5019074 | 14402.9 |
| helix-turn-helix transcriptional regulator | YT1_RS23895 | Not Available | Negative | 5019506 - 5020515 | 36368.1 |
| hypothetical protein | YT1_RS23900 | Not Available | Positive | 5020737 - 5021147 | 14116.8 |
| plp-dependent cysteine synthase family protein | YT1_RS23905 | Not Available | Positive | 5021245 - 5022360 | 39586.1 |
| mfs transporter | YT1_RS23910 | Not Available | Positive | 5022369 - 5023646 | 44134.4 |
| f510_1955 family glycosylhydrolase | YT1_RS23915 | Not Available | Positive | 5023695 - 5024525 | 27503.0 |
| duf305 domain-containing protein | YT1_RS23920 | Not Available | Negative | 5024628 - 5025341 | 24786.4 |
| shoct domain-containing protein | YT1_RS23925 | Not Available | Positive | 5025786 - 5026052 | 9870.04 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


