Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ig-like domain-containing protein | YT1_RS23830 | Not Available | Negative | 5005070 - 5005978 | 32728.1 |
| fad-dependent oxidoreductase | YT1_RS23835 | Not Available | Negative | 5006124 - 5007803 | 60789.7 |
| dodecin | YT1_RS23840 | Not Available | Negative | 5007925 - 5008140 | 7819.22 |
| serine hydrolase domain-containing protein | YT1_RS23845 | Not Available | Negative | 5008191 - 5009399 | 44123.0 |
| duf6764 family protein | YT1_RS23850 | Not Available | Negative | 5009482 - 5010009 | 16442.6 |
| dna polymerase domain-containing protein | YT1_RS23855 | Not Available | Negative | 5010154 - 5011179 | 37848.0 |
| atp-dependent dna ligase | YT1_RS23860 | Not Available | Negative | 5011213 - 5012280 | 39241.8 |
| hypothetical protein | YT1_RS23865 | Not Available | Positive | 5012380 - 5012988 | 21026.1 |
| magnesium/cobalt transporter cora | YT1_RS23870 | Not Available | Negative | 5013011 - 5014168 | 42430.6 |
| 3'-5' exonuclease | YT1_RS23875 | Not Available | Positive | 5014493 - 5015173 | 24900.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


