Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioesterase family protein | YT1_RS03160 | Not Available | Positive | 443311 - 444081 | 27657.0 |
| atp-binding cassette domain-containing protein | YT1_RS03165 | Not Available | Negative | 444119 - 446506 | 84254.8 |
| helix-turn-helix transcriptional regulator | YT1_RS03170 | Not Available | Negative | 446568 - 447017 | 16389.8 |
| voc family protein | YT1_RS03175 | Not Available | Positive | 447198 - 447608 | 15088.8 |
| cation diffusion facilitator family transporter | YT1_RS03180 | Not Available | Negative | 447868 - 448782 | 31967.9 |
| integration host factor, actinobacterial type | YT1_RS03185 | Not Available | Negative | 448892 - 449209 | 10879.3 |
| tetr/acrr family transcriptional regulator | YT1_RS03190 | Not Available | Positive | 449408 - 449998 | 20965.3 |
| acetoin reductase | YT1_RS03195 | Not Available | Negative | 450055 - 450834 | 26605.7 |
| iclr family transcriptional regulator | YT1_RS03200 | Not Available | Positive | 450969 - 451640 | 23156.9 |
| rifampin monooxygenase | YT1_RS03205 | Not Available | Positive | 451968 - 453395 | 51090.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


