Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha/beta fold hydrolase | YT1_RS23535 | Not Available | Negative | 4939405 - 4940193 | 27548.4 |
| sos response-associated peptidase | YT1_RS23540 | Not Available | Negative | 4940256 - 4940963 | 26344.1 |
| bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | YT1_RS23545 | Not Available | Positive | 4941213 - 4942025 | 27981.3 |
| sdr family nad(p)-dependent oxidoreductase | YT1_RS23550 | Not Available | Positive | 4942204 - 4942902 | 23706.3 |
| abc1 kinase family protein | YT1_RS23555 | Not Available | Negative | 4943019 - 4944419 | 50626.3 |
| sigma-70 family rna polymerase sigma factor | YT1_RS23560 | Not Available | Positive | 4944587 - 4945582 | 36642.2 |
| voc family protein | YT1_RS23565 | Not Available | Negative | 4945592 - 4946044 | 16537.4 |
| pirin family protein | YT1_RS23570 | Not Available | Positive | 4946490 - 4947458 | 33982.4 |
| pirin family protein | YT1_RS23575 | Not Available | Positive | 4947514 - 4948287 | 28157.2 |
| paai family thioesterase | YT1_RS23580 | Not Available | Positive | 4948370 - 4949278 | 31143.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


