Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoenolpyruvate carboxykinase (gtp) | YT1_RS23240 | Not Available | Negative | 4875624 - 4877453 | 67370.2 |
| duf6802 family protein | YT1_RS23245 | Not Available | Negative | 4877732 - 4878076 | 11846.5 |
| hypothetical protein | YT1_RS23250 | Not Available | Negative | 4878087 - 4879526 | 50340.2 |
| hypothetical protein | YT1_RS23255 | Not Available | Negative | 4879526 - 4880170 | 22030.1 |
| trna (guanosine(46)-n7)-methyltransferase trmb | YT1_RS23260 | Not Available | Positive | 4880335 - 4881117 | 28946.2 |
| nyn domain-containing protein | YT1_RS23265 | Not Available | Positive | 4881114 - 4881806 | 24971.6 |
| mmpl family transporter | YT1_RS23270 | Not Available | Positive | 4881816 - 4884947 | 111073.0 |
| duf2339 domain-containing protein | YT1_RS23275 | Not Available | Negative | 4884986 - 4886833 | 62857.6 |
| duf1707 domain-containing protein | YT1_RS23280 | Not Available | Negative | 4886907 - 4887581 | 23942.1 |
| fad-binding oxidoreductase | YT1_RS23285 | Not Available | Negative | 4887643 - 4889052 | 47753.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


