Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyl-coa dehydrogenase | YT1_RS23090 | Not Available | Positive | 4838089 - 4839924 | 66649.1 |
| vanw family protein | YT1_RS23095 | Not Available | Negative | 4840023 - 4842536 | 84886.0 |
| acetyl-coa c-acetyltransferase | YT1_RS23100 | Not Available | Negative | 4842781 - 4844094 | 46391.4 |
| 3-oxoacyl-acp reductase | YT1_RS23105 | Not Available | Positive | 4844238 - 4845584 | 45957.1 |
| maoc family dehydratase | YT1_RS23110 | Not Available | Positive | 4845584 - 4846441 | 31113.6 |
| alkane 1-monooxygenase | YT1_RS23115 | Not Available | Positive | 4846714 - 4847937 | 46392.8 |
| rubredoxin | YT1_RS23120 | Not Available | Positive | 4847937 - 4848098 | 5888.75 |
| rubredoxin | YT1_RS23125 | Not Available | Positive | 4848100 - 4848285 | 7015.93 |
| nad(p)/fad-dependent oxidoreductase | YT1_RS23130 | Not Available | Positive | 4848282 - 4849520 | 43329.3 |
| tetr/acrr family transcriptional regulator | YT1_RS23135 | Not Available | Negative | 4849623 - 4850231 | 22067.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


