Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sdr family nad(p)-dependent oxidoreductase | YT1_RS22890 | Not Available | Positive | 4801067 - 4801819 | 26386.4 |
| 12-oxophytodienoate reductase | YT1_RS22895 | Not Available | Positive | 4802008 - 4803147 | 40621.1 |
| coniferyl-aldehyde dehydrogenase | YT1_RS22900 | Not Available | Positive | 4803191 - 4804069 | 31062.8 |
| nuclear transport factor 2 family protein | YT1_RS22905 | Not Available | Positive | 4804066 - 4804524 | 17144.1 |
| nuclear transport factor 2 family protein | YT1_RS22910 | Not Available | Positive | 4804538 - 4805065 | 19966.5 |
| hypothetical protein | YT1_RS22915 | Not Available | Negative | 4805395 - 4805772 | 13121.5 |
| hypothetical protein | YT1_RS22920 | Not Available | Negative | 4805809 - 4806486 | 24317.2 |
| hypothetical protein | YT1_RS22925 | Not Available | Negative | 4806674 - 4806898 | 8232.85 |
| hemerythrin domain-containing protein | YT1_RS22930 | Not Available | Negative | 4806961 - 4808154 | 45223.6 |
| tetr/acrr family transcriptional regulator | YT1_RS22935 | Not Available | Negative | 4808184 - 4808840 | 23676.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


