Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-ketoacid dehydrogenase subunit beta | YT1_RS22840 | Not Available | Negative | 4790960 - 4791991 | 36191.3 |
| thiamine pyrophosphate-dependent dehydrogenase e1 component subunit alpha | YT1_RS22845 | Not Available | Negative | 4792006 - 4792971 | 33980.1 |
| gtp-binding protein | YT1_RS22850 | Not Available | Negative | 4793527 - 4794516 | 35226.9 |
| hypothetical protein | YT1_RS22855 | Not Available | Negative | 4794798 - 4795007 | 6870.89 |
| hypothetical protein | YT1_RS22860 | Not Available | Negative | 4795084 - 4795383 | 11084.1 |
| iclr family transcriptional regulator | YT1_RS22865 | Not Available | Negative | 4795626 - 4796519 | 32358.9 |
| tigr03619 family f420-dependent llm class oxidoreductase | YT1_RS22870 | Not Available | Positive | 4796765 - 4797664 | 32374.7 |
| nuclear transport factor 2 family protein | YT1_RS22875 | Not Available | Positive | 4797661 - 4798140 | 18191.6 |
| acyl-coa synthetase | YT1_RS22880 | Not Available | Negative | 4798206 - 4799828 | 57033.8 |
| 3-oxoacyl-acp reductase | YT1_RS22885 | Not Available | Positive | 4800111 - 4801049 | 32312.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


