Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-grasp domain-containing protein | YT1_RS22790 | Not Available | Negative | 4780317 - 4781606 | 45038.7 |
| tetr family transcriptional regulator | YT1_RS22795 | Not Available | Negative | 4781861 - 4782220 | 12772.0 |
| fbp domain-containing protein | YT1_RS22800 | Not Available | Positive | 4782118 - 4782468 | 12393.8 |
| llm class flavin-dependent oxidoreductase | YT1_RS22805 | Not Available | Negative | 4782512 - 4783819 | 47059.3 |
| 3-oxoacyl-acp reductase | YT1_RS22810 | Not Available | Negative | 4783819 - 4784583 | 26392.3 |
| helix-turn-helix domain-containing protein | YT1_RS22815 | Not Available | Positive | 4785327 - 4786529 | 42810.0 |
| duf3263 domain-containing protein | YT1_RS22820 | Not Available | Negative | 4786622 - 4786912 | 10542.6 |
| lipoyl synthase | YT1_RS22825 | Not Available | Negative | 4786917 - 4787921 | 36960.0 |
| dihydrolipoyl dehydrogenase | YT1_RS22830 | Not Available | Negative | 4787997 - 4789397 | 49073.6 |
| 2-oxo acid dehydrogenase subunit e2 | YT1_RS22835 | Not Available | Negative | 4789408 - 4790958 | 54177.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


