Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| intradiol ring-cleavage dioxygenase | YT1_RS22635 | Not Available | Negative | 4746376 - 4747335 | 32764.8 |
| duf4177 domain-containing protein | YT1_RS22640 | Not Available | Positive | 4747541 - 4747738 | 7221.8 |
| tetr/acrr family transcriptional regulator | YT1_RS22645 | Not Available | Negative | 4747749 - 4748354 | 21652.8 |
| flavin-containing monooxygenase | YT1_RS22650 | Not Available | Positive | 4748544 - 4749908 | 50690.6 |
| alpha/beta hydrolase | YT1_RS22655 | Not Available | Positive | 4749905 - 4750828 | 32673.4 |
| fatty-acid--coa ligase fadd1 | YT1_RS22660 | Not Available | Positive | 4750833 - 4752437 | 57671.2 |
| aldehyde dehydrogenase family protein | YT1_RS22665 | Not Available | Positive | 4752497 - 4753930 | 51010.4 |
| ndma-dependent alcohol dehydrogenase | YT1_RS22670 | Not Available | Positive | 4753977 - 4755092 | 38534.0 |
| tigr03617 family f420-dependent llm class oxidoreductase | YT1_RS22675 | Not Available | Positive | 4755112 - 4756161 | 38025.4 |
| hypothetical protein | YT1_RS22680 | Not Available | Positive | 4756273 - 4757652 | 46539.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


