Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| universal stress protein | YT1_RS22585 | Not Available | Negative | 4731829 - 4732719 | 31310.8 |
| gamma-aminobutyraldehyde dehydrogenase | YT1_RS22590 | Not Available | Negative | 4732798 - 4734225 | 50576.9 |
| flavin monoamine oxidase family protein | YT1_RS22595 | Not Available | Negative | 4734492 - 4735904 | 50953.1 |
| tetr family transcriptional regulator | YT1_RS22600 | Not Available | Positive | 4736033 - 4736698 | 23223.6 |
| nad-dependent succinate-semialdehyde dehydrogenase | YT1_RS22605 | Not Available | Negative | 4736783 - 4738228 | 50301.2 |
| 4-aminobutyrate--2-oxoglutarate transaminase | YT1_RS22610 | Not Available | Negative | 4738225 - 4739613 | 48217.8 |
| pucr family transcriptional regulator | YT1_RS22615 | Not Available | Positive | 4739748 - 4741250 | 52816.4 |
| helix-turn-helix domain-containing protein | YT1_RS22620 | Not Available | Positive | 4741685 - 4742194 | 18082.2 |
| res domain-containing protein | YT1_RS22625 | Not Available | Positive | 4742188 - 4742889 | 25654.7 |
| nad-glutamate dehydrogenase domain-containing protein | YT1_RS22630 | Not Available | Negative | 4743218 - 4746253 | 107367.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


