Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sdr family oxidoreductase | YT1_RS22535 | Not Available | Negative | 4721377 - 4722153 | 26512.6 |
| sdr family nad(p)-dependent oxidoreductase | YT1_RS22540 | Not Available | Positive | 4722327 - 4723088 | 26801.9 |
| mycofactocin-coupled sdr family oxidoreductase | YT1_RS22545 | Not Available | Negative | 4723152 - 4723988 | 28867.3 |
| hypothetical protein | YT1_RS22550 | Not Available | Negative | 4724093 - 4724443 | 11960.5 |
| glutamine synthetase family protein | YT1_RS22555 | Not Available | Negative | 4724524 - 4725831 | 45559.4 |
| nadh:flavin oxidoreductase | YT1_RS22560 | Not Available | Positive | 4726142 - 4727413 | 46169.3 |
| agmatine/peptidylarginine deiminase | YT1_RS22565 | Not Available | Negative | 4727502 - 4728518 | 37392.8 |
| nitrilase-related carbon-nitrogen hydrolase | YT1_RS22570 | Not Available | Negative | 4728515 - 4729480 | 34543.5 |
| tetr/acrr family transcriptional regulator c-terminal domain-containing protein | YT1_RS22575 | Not Available | Positive | 4729588 - 4730199 | 21480.8 |
| apc family permease | YT1_RS22580 | Not Available | Negative | 4730235 - 4731821 | 55292.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


