Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha/beta fold hydrolase | YT1_RS22390 | Not Available | Positive | 4689576 - 4690445 | 31391.9 |
| 2-keto-4-pentenoate hydratase | YT1_RS22395 | Not Available | Positive | 4690563 - 4691348 | 28228.6 |
| acetaldehyde dehydrogenase (acetylating) | YT1_RS22400 | Not Available | Positive | 4691361 - 4692263 | 31589.7 |
| 4-hydroxy-2-oxovalerate aldolase | YT1_RS22405 | Not Available | Positive | 4692303 - 4693325 | 35658.6 |
| acyl-coa dehydrogenase family protein | YT1_RS22410 | Not Available | Positive | 4693357 - 4694535 | 42840.1 |
| biphenyl-2,3-diol 1,2-dioxygenase | YT1_RS22415 | Not Available | Positive | 4694567 - 4695478 | 33326.4 |
| hypothetical protein | YT1_RS27855 | Not Available | Positive | 4695549 - 4695680 | 4488.73 |
| sdr family nad(p)-dependent oxidoreductase | YT1_RS22420 | Not Available | Negative | 4696034 - 4696825 | 28189.9 |
| hypothetical protein | YT1_RS22425 | Not Available | Negative | 4696847 - 4697104 | 9360.06 |
| rieske 2fe-2s domain-containing protein | YT1_RS22430 | Not Available | Negative | 4697082 - 4698257 | 44378.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


