Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rimk family alpha-l-glutamate ligase | YT1_RS03005 | Not Available | Positive | 414814 - 415872 | 38195.5 |
| sagb/thcox family dehydrogenase | YT1_RS03010 | Not Available | Positive | 415869 - 416942 | 39004.4 |
| mfs transporter | YT1_RS03015 | Not Available | Positive | 416949 - 418241 | 43167.7 |
| nad(p)h-dependent flavin oxidoreductase | YT1_RS03020 | Not Available | Negative | 418134 - 419111 | 34073.3 |
| nuclear transport factor 2 family protein | YT1_RS03025 | Not Available | Negative | 419180 - 419578 | 14636.5 |
| crotonase/enoyl-coa hydratase family protein | YT1_RS03030 | Not Available | Negative | 419648 - 420505 | 30812.6 |
| whib family transcriptional regulator | YT1_RS03035 | Not Available | Negative | 420615 - 420863 | 9032.5 |
| crotonase/enoyl-coa hydratase family protein | YT1_RS03045 | Not Available | Positive | 421384 - 422145 | 26094.5 |
| hypothetical protein | YT1_RS03050 | Not Available | Negative | 422219 - 422533 | 10658.7 |
| hypothetical protein | YT1_RS03055 | Not Available | Positive | 422809 - 423213 | 14709.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


