Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| esterase/lipase family protein | YT1_RS22290 | Not Available | Negative | 4670284 - 4671561 | 45108.8 |
| Trna-gly | Not Available | Not Available | Positive | 4671794 - 4671864 | Not Available |
| yeih family protein | YT1_RS22300 | Not Available | Negative | 4671962 - 4672963 | 32950.8 |
| arac family transcriptional regulator | YT1_RS22305 | Not Available | Negative | 4673595 - 4674629 | 38143.0 |
| poly(3-hydroxyalkanoate) depolymerase | YT1_RS22310 | Not Available | Negative | 4674726 - 4675550 | 28878.3 |
| maoc family dehydratase | YT1_RS22315 | Not Available | Negative | 4675547 - 4675999 | 16261.6 |
| helix-turn-helix transcriptional regulator | YT1_RS22320 | Not Available | Negative | 4676017 - 4676643 | 22284.0 |
| is3 family transposase | YT1_RS22325 | Not Available | Positive | 4676698 - 4677971 | 47831.2 |
| helix-turn-helix transcriptional regulator | YT1_RS22330 | Not Available | Positive | 4678001 - 4678600 | 22134.4 |
| abc transporter substrate-binding protein | YT1_RS22335 | Not Available | Positive | 4678656 - 4680224 | 56367.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


