Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix transcriptional regulator | YT1_RS22035 | Not Available | Positive | 4619962 - 4620855 | 32996.9 |
| hypothetical protein | YT1_RS22040 | Not Available | Negative | 4620889 - 4622631 | 60606.5 |
| hypothetical protein | YT1_RS22045 | Not Available | Negative | 4622877 - 4623374 | 17880.3 |
| mannan endo-1,4-beta-mannosidase | YT1_RS22050 | Not Available | Negative | 4623738 - 4624796 | 37841.6 |
| type ii toxin-antitoxin system phd/yefm family antitoxin | YT1_RS22055 | Not Available | Positive | 4624983 - 4625231 | 9045.6 |
| type ii toxin-antitoxin system vapc family toxin | YT1_RS22060 | Not Available | Positive | 4625216 - 4625608 | 13981.0 |
| hypothetical protein | YT1_RS22065 | Not Available | Positive | 4625770 - 4626600 | 30515.6 |
| type ii toxin-antitoxin system pemk/mazf family toxin | YT1_RS22070 | Not Available | Negative | 4626663 - 4627019 | 12868.3 |
| ribbon-helix-helix protein, copg family | YT1_RS22075 | Not Available | Negative | 4627016 - 4627228 | 7652.78 |
| gnat family n-acetyltransferase | YT1_RS22080 | Not Available | Positive | 4627439 - 4628020 | 21090.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


