Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| o-antigen polymerase | YT1_RS21885 | Not Available | Negative | 4586468 - 4587805 | 48330.0 |
| glycosyltransferase | YT1_RS21890 | Not Available | Negative | 4587967 - 4589088 | 40279.3 |
| glycosyltransferase | YT1_RS21895 | Not Available | Negative | 4589097 - 4590251 | 42165.1 |
| udp-glucose dehydrogenase family protein | YT1_RS21900 | Not Available | Negative | 4590288 - 4591616 | 47692.2 |
| sugar transferase | YT1_RS21905 | Not Available | Negative | 4591656 - 4593200 | 56960.1 |
| utp--glucose-1-phosphate uridylyltransferase | YT1_RS21910 | Not Available | Positive | 4593989 - 4594933 | 33222.3 |
| udp-glucose dehydrogenase family protein | YT1_RS21915 | Not Available | Negative | 4594966 - 4596285 | 46738.7 |
| mannose-6-phosphate isomerase, class i | YT1_RS21920 | Not Available | Negative | 4596379 - 4597626 | 44701.1 |
| sugar phosphate nucleotidyltransferase | YT1_RS21925 | Not Available | Negative | 4597669 - 4598748 | 37867.3 |
| hypothetical protein | YT1_RS21930 | Not Available | Negative | 4598857 - 4599507 | 21459.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


