Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iv toxin-antitoxin system abiei family antitoxin domain-containing protein | YT1_RS21735 | Not Available | Positive | 4525068 - 4525976 | 33280.6 |
| dynamin family protein | YT1_RS21740 | Not Available | Negative | 4526050 - 4527501 | 51216.4 |
| dynamin family protein | YT1_RS21745 | Not Available | Negative | 4527498 - 4529324 | 65592.1 |
| inib n-terminal domain-containing protein | YT1_RS21750 | Not Available | Negative | 4529446 - 4531740 | 66483.7 |
| hsp70 family protein | YT1_RS21755 | Not Available | Positive | 4531986 - 4533785 | 57684.1 |
| luxr c-terminal-related transcriptional regulator | YT1_RS21760 | Not Available | Positive | 4533789 - 4536257 | 83543.8 |
| hypothetical protein | YT1_RS21765 | Not Available | Positive | 4536248 - 4537756 | 50295.8 |
| s1 family peptidase | YT1_RS21770 | Not Available | Positive | 4537849 - 4539177 | 45213.9 |
| s1 family peptidase | YT1_RS21775 | Not Available | Positive | 4539297 - 4540598 | 45067.1 |
| hypothetical protein | YT1_RS21780 | Not Available | Negative | 4540983 - 4541678 | 22986.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


