Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent chaperone clpb | YT1_RS21635 | Not Available | Negative | 4502731 - 4505286 | 92394.9 |
| fad-binding oxidoreductase | YT1_RS21640 | Not Available | Positive | 4505528 - 4506688 | 42460.9 |
| type iv toxin-antitoxin system abiei family antitoxin domain-containing protein | YT1_RS21645 | Not Available | Positive | 4506842 - 4507888 | 38676.3 |
| amp-binding protein | YT1_RS21650 | Not Available | Negative | 4507921 - 4509474 | 56113.6 |
| fad-binding oxidoreductase | YT1_RS21655 | Not Available | Positive | 4509649 - 4510431 | 27918.3 |
| 3-ketosteroid-delta-1-dehydrogenase | YT1_RS21660 | Not Available | Negative | 4510433 - 4512127 | 60096.5 |
| rieske 2fe-2s domain-containing protein | YT1_RS21665 | Not Available | Positive | 4512372 - 4513538 | 43594.7 |
| helix-turn-helix transcriptional regulator | YT1_RS21670 | Not Available | Positive | 4513568 - 4514745 | 43270.9 |
| helix-turn-helix transcriptional regulator | YT1_RS21675 | Not Available | Positive | 4514773 - 4515677 | 31235.5 |
| iclr family transcriptional regulator | YT1_RS21680 | Not Available | Positive | 4515858 - 4516583 | 25836.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


