Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf5926 family protein | YT1_RS02910 | Not Available | Positive | 395707 - 396621 | 32536.4 |
| lcp family protein | YT1_RS02915 | Not Available | Negative | 396661 - 397893 | 43708.1 |
| cpbp family intramembrane glutamic endopeptidase | YT1_RS02920 | Not Available | Negative | 398042 - 398845 | 28937.8 |
| hypothetical protein | YT1_RS02925 | Not Available | Positive | 399115 - 399384 | 8872.21 |
| kelch repeat-containing protein | YT1_RS02930 | Not Available | Negative | 399476 - 402526 | 105958.0 |
| duf2470 domain-containing protein | YT1_RS02935 | Not Available | Negative | 402592 - 403398 | 28368.0 |
| hypothetical protein | YT1_RS02940 | Not Available | Positive | 403481 - 404179 | 23569.5 |
| prephenate dehydratase | YT1_RS02945 | Not Available | Positive | 404265 - 405179 | 32287.2 |
| histidine phosphatase family protein | YT1_RS02950 | Not Available | Positive | 405176 - 405838 | 23664.9 |
| tetr/acrr family transcriptional regulator | YT1_RS02955 | Not Available | Positive | 405956 - 406603 | 23638.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


