Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphate acetyltransferase | YT1_RS21185 | Not Available | Negative | 4403414 - 4405498 | 73965.5 |
| catechol 1,2-dioxygenase | YT1_RS21190 | Not Available | Negative | 4405583 - 4406431 | 31139.5 |
| 4-hydroxyphenylacetate 3-hydroxylase family protein | YT1_RS21195 | Not Available | Negative | 4406451 - 4408070 | 59938.8 |
| flavin reductase family protein | YT1_RS21200 | Not Available | Negative | 4408102 - 4408674 | 20030.3 |
| arac family transcriptional regulator | YT1_RS21205 | Not Available | Positive | 4408912 - 4409856 | 34441.2 |
| glucose-6-phosphate dehydrogenase (coenzyme-f420) | YT1_RS21210 | Not Available | Negative | 4409935 - 4410948 | 36976.0 |
| rdd family protein | YT1_RS21215 | Not Available | Negative | 4411020 - 4411487 | 16736.7 |
| hypothetical protein | YT1_RS21220 | Not Available | Negative | 4411484 - 4412224 | 25763.0 |
| hypothetical protein | YT1_RS21225 | Not Available | Negative | 4412298 - 4412768 | 17003.4 |
| sigma-54-dependent fis family transcriptional regulator | YT1_RS21230 | Not Available | Negative | 4412916 - 4414751 | 65221.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


