Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide deformylase | YT1_RS21085 | Not Available | Positive | 4383431 - 4384027 | 21466.3 |
| gnat family n-acetyltransferase | YT1_RS21090 | Not Available | Positive | 4384035 - 4385003 | 34182.0 |
| exodeoxyribonuclease iii | YT1_RS21095 | Not Available | Positive | 4385013 - 4385816 | 29848.9 |
| gnat family n-acetyltransferase | YT1_RS21100 | Not Available | Negative | 4385840 - 4386190 | 13133.7 |
| bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | YT1_RS21105 | Not Available | Positive | 4386402 - 4387244 | 29037.7 |
| adenylate/guanylate cyclase domain-containing protein | YT1_RS21110 | Not Available | Negative | 4387216 - 4388040 | 29365.3 |
| m20/m25/m40 family metallo-hydrolase | YT1_RS21115 | Not Available | Negative | 4388033 - 4389493 | 49244.8 |
| abc transporter permease | YT1_RS21120 | Not Available | Negative | 4389507 - 4390316 | 28207.8 |
| abc transporter atp-binding protein | YT1_RS21125 | Not Available | Negative | 4390313 - 4391257 | 33238.2 |
| antibiotic biosynthesis monooxygenase | YT1_RS21130 | Not Available | Negative | 4391479 - 4392108 | 23248.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


