Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| na(+)/h(+) antiporter subunit c | YT1_RS21035 | Not Available | Positive | 4375670 - 4376278 | 21568.4 |
| na+/h+ antiporter subunit d | YT1_RS21040 | Not Available | Positive | 4376275 - 4377864 | 54872.3 |
| na+/h+ antiporter subunit e | YT1_RS21045 | Not Available | Positive | 4377861 - 4378427 | 21300.5 |
| monovalent cation/h+ antiporter complex subunit f | YT1_RS21050 | Not Available | Positive | 4378424 - 4378681 | 8897.17 |
| monovalent cation/h(+) antiporter subunit g | YT1_RS21055 | Not Available | Positive | 4378678 - 4379010 | 11827.0 |
| phosphatase pap2 family protein | YT1_RS21060 | Not Available | Negative | 4379042 - 4380373 | 46544.2 |
| glutamate--cysteine ligase | YT1_RS21065 | Not Available | Negative | 4380438 - 4381559 | 41626.6 |
| superoxide dismutase family protein | YT1_RS21070 | Not Available | Negative | 4381639 - 4382289 | 21140.0 |
| lytr c-terminal domain-containing protein | YT1_RS21075 | Not Available | Negative | 4382349 - 4382888 | 17485.2 |
| duf3263 domain-containing protein | YT1_RS21080 | Not Available | Negative | 4382937 - 4383296 | 13379.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


