Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine ammonia-lyase | YT1_RS20985 | Not Available | Negative | 4363633 - 4365180 | 52646.4 |
| padr family transcriptional regulator | YT1_RS20990 | Not Available | Negative | 4365331 - 4365951 | 22439.6 |
| duf1707 domain-containing protein | YT1_RS20995 | Not Available | Positive | 4366075 - 4366587 | 18464.2 |
| srpbcc family protein | YT1_RS21000 | Not Available | Positive | 4366642 - 4367109 | 16856.5 |
| phosphatidylserine decarboxylase | YT1_RS21005 | Not Available | Positive | 4367184 - 4367897 | 25081.5 |
| cdp-alcohol phosphatidyltransferase family protein | YT1_RS21010 | Not Available | Positive | 4367894 - 4368808 | 32684.4 |
| aaa family atpase | YT1_RS21015 | Not Available | Positive | 4368830 - 4371007 | 75196.4 |
| hypothetical protein | YT1_RS21020 | Not Available | Positive | 4371010 - 4372176 | 37552.3 |
| nudix hydrolase | YT1_RS21025 | Not Available | Negative | 4372188 - 4372610 | 15002.0 |
| na+/h+ antiporter subunit a | YT1_RS21030 | Not Available | Positive | 4372842 - 4375673 | 99294.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


