Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pspc domain-containing protein | YT1_RS20935 | Not Available | Positive | 4351198 - 4351404 | 7200.87 |
| bile acid:sodium symporter family protein | YT1_RS20940 | Not Available | Positive | 4351518 - 4352507 | 34708.1 |
| chaperonin groel | YT1_RS20945 | Not Available | Negative | 4352975 - 4354600 | 56367.5 |
| duf6764 family protein | YT1_RS20950 | Not Available | Negative | 4354850 - 4355377 | 16565.4 |
| had-iia family hydrolase | YT1_RS20955 | Not Available | Negative | 4355478 - 4356254 | 27438.0 |
| molecular chaperone htpg | YT1_RS20960 | Not Available | Negative | 4356360 - 4358291 | 72850.9 |
| urocanate hydratase | YT1_RS20965 | Not Available | Positive | 4358490 - 4360172 | 59888.2 |
| imidazolonepropionase | YT1_RS20970 | Not Available | Positive | 4360177 - 4361361 | 41070.0 |
| formimidoylglutamase | YT1_RS20975 | Not Available | Positive | 4361358 - 4362353 | 34547.1 |
| nad(p)/fad-dependent oxidoreductase | YT1_RS20980 | Not Available | Positive | 4362391 - 4363629 | 44341.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


