Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| urea abc transporter permease subunit urtb | YT1_RS20835 | Not Available | Positive | 4327629 - 4328513 | 30754.9 |
| urea abc transporter permease subunit urtc | YT1_RS20840 | Not Available | Positive | 4328513 - 4329631 | 39085.9 |
| urea abc transporter atp-binding protein urtd | YT1_RS20845 | Not Available | Positive | 4329628 - 4330410 | 27999.7 |
| urea abc transporter atp-binding subunit urte | YT1_RS20850 | Not Available | Positive | 4330412 - 4331104 | 24272.6 |
| gntr family transcriptional regulator | YT1_RS20855 | Not Available | Positive | 4331104 - 4331793 | 25649.6 |
| carboxymuconolactone decarboxylase family protein | YT1_RS20860 | Not Available | Positive | 4331799 - 4332329 | 19771.1 |
| gntr family transcriptional regulator | YT1_RS20865 | Not Available | Positive | 4332400 - 4333095 | 25984.3 |
| urea carboxylase | YT1_RS20870 | Not Available | Positive | 4333147 - 4336752 | 127916.0 |
| allophanate hydrolase | YT1_RS20875 | Not Available | Positive | 4336749 - 4338476 | 59132.4 |
| hypothetical protein | YT1_RS20880 | Not Available | Negative | 4338530 - 4339423 | 32888.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


