Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tmem165/gdt1 family protein | YT1_RS02860 | Not Available | Negative | 387068 - 387772 | 24356.9 |
| hypothetical protein | YT1_RS02865 | Not Available | Negative | 388027 - 388554 | 18120.6 |
| superoxide dismutase | YT1_RS02870 | Not Available | Negative | 388734 - 389357 | 23093.2 |
| acyltransferase family protein | YT1_RS02875 | Not Available | Positive | 389633 - 390736 | 40834.9 |
| peptide-methionine (s)-s-oxide reductase msra | YT1_RS02880 | Not Available | Positive | 390746 - 391414 | 24096.1 |
| hypothetical protein | YT1_RS02885 | Not Available | Positive | 391554 - 392150 | 21329.6 |
| llm class f420-dependent oxidoreductase | YT1_RS02890 | Not Available | Negative | 392164 - 393090 | 33509.7 |
| rhodanese-like domain-containing protein | YT1_RS02895 | Not Available | Positive | 393600 - 393941 | 12169.3 |
| duf4328 domain-containing protein | YT1_RS02900 | Not Available | Positive | 393941 - 394927 | 35684.6 |
| glycerophosphodiester phosphodiesterase | YT1_RS02905 | Not Available | Positive | 394924 - 395697 | 27656.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


