Rhodococcus ruber strain YC-YT1

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber strain YC-YT1 is a Gram-positive bacterium predominantly found in soil environments. This strain is characterized by the presence of flagella, which may contribute to its motility and ability to adapt to various soil conditions. Notably, it possesses a single replicon, which is indicative of its genomic organization. The genomic information for this strain is cataloged under the accession number NZ_CP023714.1. Rhodococcus species, including R. ruber, are known for their metabolic versatility, allowing them to degrade a wide range of organic compounds. This adaptability makes them important in bioremediation processes, where they can break down pollutants in contaminated soils. The ability to thrive in diverse soil habitats suggests that R. ruber strain YC-YT1 may play a significant role in soil ecology, potentially influencing nutrient cycling and the degradation of organic materials. Overall, the traits of Rhodococcus ruber strain YC-YT1 highlight its ecological importance and potential applications in environmental microbiology, particularly in the context of soil health and bioremediation efforts.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
Strainstrain YC-YT1

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain YC-YT1 chromosome, complete genome.

Gene Summary

Adenine Count

838143 bp

Thymine Count

839814 bp

Guanine Count

1998922 bp

Cytosine Count

1992973 bp

Genome Length

5669852 bp

Protein-coding Genes

5139 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tmem165/gdt1 family proteinYT1_RS02860Not AvailableNegative387068 - 38777224356.9
hypothetical proteinYT1_RS02865Not AvailableNegative388027 - 38855418120.6
superoxide dismutaseYT1_RS02870Not AvailableNegative388734 - 38935723093.2
acyltransferase family proteinYT1_RS02875Not AvailablePositive389633 - 39073640834.9
peptide-methionine (s)-s-oxide reductase msraYT1_RS02880Not AvailablePositive390746 - 39141424096.1
hypothetical proteinYT1_RS02885Not AvailablePositive391554 - 39215021329.6
llm class f420-dependent oxidoreductaseYT1_RS02890Not AvailableNegative392164 - 39309033509.7
rhodanese-like domain-containing proteinYT1_RS02895Not AvailablePositive393600 - 39394112169.3
duf4328 domain-containing proteinYT1_RS02900Not AvailablePositive393941 - 39492735684.6
glycerophosphodiester phosphodiesteraseYT1_RS02905Not AvailablePositive394924 - 39569727656.1

Displaying genes 391 – 400 of 5228 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.