Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigb/sigf/sigg family rna polymerase sigma factor | YT1_RS20780 | Not Available | Positive | 4314872 - 4315669 | 28960.4 |
| duf4235 domain-containing protein | YT1_RS20785 | Not Available | Negative | 4315699 - 4315965 | 9222.18 |
| nad(p)-dependent alcohol dehydrogenase | YT1_RS20790 | Not Available | Negative | 4316035 - 4317075 | 36741.9 |
| 5-methyltetrahydropteroyltriglutamate-- homocysteine s-methyltransferase | YT1_RS20795 | Not Available | Negative | 4317144 - 4319429 | 85260.6 |
| 3-hydroxybutyryl-coa dehydrogenase | YT1_RS20800 | Not Available | Negative | 4319538 - 4320434 | 32081.1 |
| isocitrate lyase | YT1_RS20805 | Not Available | Negative | 4320552 - 4321841 | 46815.9 |
| globin domain-containing protein | YT1_RS20815 | Not Available | Positive | 4322374 - 4323528 | 41575.6 |
| acetate metabolism transcriptional regulator ramb | YT1_RS20820 | Not Available | Positive | 4323580 - 4324992 | 52644.9 |
| hypothetical protein | YT1_RS20825 | Not Available | Positive | 4325152 - 4326138 | 35731.4 |
| urea abc transporter substrate-binding protein | YT1_RS20830 | Not Available | Positive | 4326323 - 4327591 | 44428.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


