Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type 1 glutamine amidotransferase domain-containing protein | YT1_RS20730 | Not Available | Positive | 4310074 - 4310646 | 20212.7 |
| pas and antar domain-containing protein | YT1_RS20735 | Not Available | Positive | 4310706 - 4311455 | 27572.5 |
| hypothetical protein | YT1_RS20740 | Not Available | Negative | 4311412 - 4311612 | 7038.62 |
| csbd family protein | YT1_RS20745 | Not Available | Negative | 4311697 - 4311936 | 8364.39 |
| duf6480 family protein | YT1_RS20750 | Not Available | Negative | 4312036 - 4312299 | 8784.51 |
| hypothetical protein | YT1_RS20755 | Not Available | Positive | 4312513 - 4312746 | 8106.41 |
| hypothetical protein | YT1_RS20760 | Not Available | Positive | 4312756 - 4313118 | 12900.9 |
| duf4383 domain-containing protein | YT1_RS20765 | Not Available | Positive | 4313217 - 4313678 | 16269.2 |
| stas domain-containing protein | YT1_RS20770 | Not Available | Negative | 4313743 - 4314162 | 15048.0 |
| atp-binding protein | YT1_RS20775 | Not Available | Positive | 4314444 - 4314875 | 14920.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


